Cluster: ShaoY_2019_ERR3404906_bin.10_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_6447 | ShaoY_2019_ERR3404906_bin.10_k141_6447_10 | 6858 | 7904 | - | GH33 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6447 | ShaoY_2019_ERR3404906_bin.10_k141_6447_11 | 7909 | 8889 | - | 8.A.5.1.6 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_6447 | ShaoY_2019_ERR3404906_bin.10_k141_6447_12 | 8913 | 9887 | - | Lactonase |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6447 | ShaoY_2019_ERR3404906_bin.10_k141_6447_13 | 9919 | 10743 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_6447 | ShaoY_2019_ERR3404906_bin.10_k141_6447_14 | 10740 | 11618 | - | 3.A.1.1.7 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6447_10
Type: CAZyme
Location: 6858 - 7904 (-)
Type: CAZyme
Location: 6858 - 7904 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6447_11
Type: TC
Location: 7909 - 8889 (-)
Type: TC
Location: 7909 - 8889 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6447_12
Type: pfam
Location: 8913 - 9887 (-)
Type: pfam
Location: 8913 - 9887 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6447_13
Type: TC
Location: 9919 - 10743 (-)
Type: TC
Location: 9919 - 10743 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_6447_14
Type: TC
Location: 10740 - 11618 (-)
Type: TC
Location: 10740 - 11618 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.