Cluster: ShaoY_2019_ERR3404906_bin.10_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_04273
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_61 | 69757 | 71406 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_62 | 71473 | 72447 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_63 | 72464 | 73345 | + | 3.A.1.1.10 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_64 | 73359 | 75407 | + | GH65 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_65 | 75428 | 76867 | + | GH4 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_66 | 76897 | 78000 | + | GH105 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_67 | 78114 | 79094 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_68 | 79542 | 80105 | + | dTDP_sugar_isom |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_69 | 80169 | 80981 | + | 3.A.1.104.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_70 | 81034 | 82368 | + | 3.A.1.103.6 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_71 | 82379 | 83140 | + | Methyltransf_11 | Methyltransf_25 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_5919 | ShaoY_2019_ERR3404906_bin.10_k141_5919_72 | 83127 | 86240 | + | GT2 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_61
Type: TC
Location: 69757 - 71406 (+)
Type: TC
Location: 69757 - 71406 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_62
Type: TC
Location: 71473 - 72447 (+)
Type: TC
Location: 71473 - 72447 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_63
Type: TC
Location: 72464 - 73345 (+)
Type: TC
Location: 72464 - 73345 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_64
Type: CAZyme
Location: 73359 - 75407 (+)
Type: CAZyme
Location: 73359 - 75407 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_65
Type: CAZyme
Location: 75428 - 76867 (+)
Type: CAZyme
Location: 75428 - 76867 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_66
Type: CAZyme
Location: 76897 - 78000 (+)
Type: CAZyme
Location: 76897 - 78000 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_67
Type:
Location: 78114 - 79094 (-)
Type:
Location: 78114 - 79094 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_68
Type: pfam
Location: 79542 - 80105 (+)
Type: pfam
Location: 79542 - 80105 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_69
Type: TC
Location: 80169 - 80981 (+)
Type: TC
Location: 80169 - 80981 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_70
Type: TC
Location: 81034 - 82368 (+)
Type: TC
Location: 81034 - 82368 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_71
Type: pfam
Location: 82379 - 83140 (+)
Type: pfam
Location: 82379 - 83140 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_72
Type: CAZyme
Location: 83127 - 86240 (+)
Type: CAZyme
Location: 83127 - 86240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.