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Cluster: ShaoY_2019_ERR3404906_bin.10_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_20 20566 21558 + GT8
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_21 21571 22455 + GT2
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_22 22506 23441 + GT2
STP ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_23 23488 24594 + Aminotran_1_2
pfam ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_24 24645 25670 + ATP-grasp_3 | CPSase_L_D2 | ATPgrasp_Ter | PylC-like_N
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_25 25660 26646 + GT2
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_26 26719 27627 + 2.A.69.4.3
TF ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_27 27673 28590 - HTH_1
STP ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_28 28762 30156 + SBP_bac_1
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_29 30206 31057 + 3.A.1.1.25
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_30 31050 31892 + 3.A.1.1.44
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_31 31889 33565 + CBM91 | GH43_12
pfam ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_32 33581 35095 - GD_AH_second | SAF | GD_AH_C
TF ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_33 35258 36187 + HTH_1
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_34 36182 37945 - 8.A.59.2.1
TF ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_35 37942 38682 - HTH_AraC | HTH_AraC
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_36 38849 39769 + 3.A.1.1.11
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_37 39769 40608 + 3.A.1.1.11
pfam ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_38 40620 42950 + PcRGLX_1st
TC ShaoY_2019_ERR3404906_bin.10_k141_5919 ShaoY_2019_ERR3404906_bin.10_k141_5919_39 42976 44337 + 3.A.1.1.11
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_20
Type: CAZyme
Location: 20566 - 21558 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_21
Type: CAZyme
Location: 21571 - 22455 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_22
Type: CAZyme
Location: 22506 - 23441 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_23
Type: STP
Location: 23488 - 24594 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_24
Type: pfam
Location: 24645 - 25670 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_25
Type: CAZyme
Location: 25660 - 26646 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_26
Type: TC
Location: 26719 - 27627 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_27
Type: TF
Location: 27673 - 28590 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_28
Type: STP
Location: 28762 - 30156 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_29
Type: TC
Location: 30206 - 31057 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_30
Type: TC
Location: 31050 - 31892 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_31
Type: CAZyme
Location: 31889 - 33565 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_32
Type: pfam
Location: 33581 - 35095 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_33
Type: TF
Location: 35258 - 36187 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_34
Type: TC
Location: 36182 - 37945 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_35
Type: TF
Location: 37942 - 38682 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_36
Type: TC
Location: 38849 - 39769 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_37
Type: TC
Location: 39769 - 40608 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_38
Type: pfam
Location: 40620 - 42950 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5919_39
Type: TC
Location: 42976 - 44337 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Lacrimispora
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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