Cluster: ShaoY_2019_ERR3404906_bin.10_CGC35
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_00149
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_59 | 57501 | 58121 | + | 9.B.104.1.3 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_60 | 58153 | 58569 | + | HIT | DcpS_C |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_61 | 58650 | 59192 | + | Sigma70_r2 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_62 | 59196 | 60263 | - | GT28 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_63 | 60373 | 60672 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_64 | 60675 | 60803 | - | ArsC |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_5786 | ShaoY_2019_ERR3404906_bin.10_k141_5786_65 | 60923 | 61441 | + | 9.B.156.3.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_59
Type: TC
Location: 57501 - 58121 (+)
Type: TC
Location: 57501 - 58121 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_60
Type: pfam
Location: 58153 - 58569 (+)
Type: pfam
Location: 58153 - 58569 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_61
Type: STP
Location: 58650 - 59192 (+)
Type: STP
Location: 58650 - 59192 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_62
Type: CAZyme
Location: 59196 - 60263 (-)
Type: CAZyme
Location: 59196 - 60263 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_63
Type:
Location: 60373 - 60672 (+)
Type:
Location: 60373 - 60672 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_64
Type: pfam
Location: 60675 - 60803 (-)
Type: pfam
Location: 60675 - 60803 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_5786_65
Type: TC
Location: 60923 - 61441 (+)
Type: TC
Location: 60923 - 61441 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.