Cluster: ShaoY_2019_ERR3404906_bin.10_CGC32
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_00122
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_2 | 722 | 2422 | - | GH154 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_3 | 2456 | 3637 | - | GH88 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_4 | 3664 | 4500 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_5 | 4512 | 5579 | - | 3.A.1.1.20 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_6 | 5739 | 7085 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_7 | 7353 | 9215 | + | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_8 | 9212 | 10816 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4597 | ShaoY_2019_ERR3404906_bin.10_k141_4597_9 | 10829 | 12613 | + | PL33_1 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_2
Type: CAZyme
Location: 722 - 2422 (-)
Type: CAZyme
Location: 722 - 2422 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_3
Type: CAZyme
Location: 2456 - 3637 (-)
Type: CAZyme
Location: 2456 - 3637 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_4
Type: TC
Location: 3664 - 4500 (-)
Type: TC
Location: 3664 - 4500 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_5
Type: TC
Location: 4512 - 5579 (-)
Type: TC
Location: 4512 - 5579 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_6
Type: STP
Location: 5739 - 7085 (-)
Type: STP
Location: 5739 - 7085 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_7
Type: TC
Location: 7353 - 9215 (+)
Type: TC
Location: 7353 - 9215 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_8
Type: TF
Location: 9212 - 10816 (+)
Type: TF
Location: 9212 - 10816 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4597_9
Type: CAZyme
Location: 10829 - 12613 (+)
Type: CAZyme
Location: 10829 - 12613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.