Cluster: ShaoY_2019_ERR3404906_bin.10_CGC31
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_10 | 4765 | 6099 | - | GH4 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_11 | 6120 | 7691 | - | 4.A.1.1.8 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_12 | 7860 | 8639 | - | HTH_6 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_13 | 9176 | 11860 | + | 3.A.3.2.21 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_14 | 12138 | 12767 | + | GntR |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_15 | 12898 | 14022 | + | 3.A.1.12.3 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_16 | 14019 | 14657 | + | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_17 | 14654 | 15247 | + | 3.A.1.12.4 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4508 | ShaoY_2019_ERR3404906_bin.10_k141_4508_18 | 15304 | 16227 | + | 3.A.1.12.3 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_10
Type: CAZyme
Location: 4765 - 6099 (-)
Type: CAZyme
Location: 4765 - 6099 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_11
Type: TC
Location: 6120 - 7691 (-)
Type: TC
Location: 6120 - 7691 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_12
Type: TF
Location: 7860 - 8639 (-)
Type: TF
Location: 7860 - 8639 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_13
Type: TC
Location: 9176 - 11860 (+)
Type: TC
Location: 9176 - 11860 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_14
Type: TF
Location: 12138 - 12767 (+)
Type: TF
Location: 12138 - 12767 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_15
Type: TC
Location: 12898 - 14022 (+)
Type: TC
Location: 12898 - 14022 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_16
Type: TC
Location: 14019 - 14657 (+)
Type: TC
Location: 14019 - 14657 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_17
Type: TC
Location: 14654 - 15247 (+)
Type: TC
Location: 14654 - 15247 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4508_18
Type: TC
Location: 15304 - 16227 (+)
Type: TC
Location: 15304 - 16227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.