Cluster: ShaoY_2019_ERR3404906_bin.10_CGC28
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_5 | 4760 | 5548 | - | 3.D.6.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_6 | 5564 | 6139 | - | 3.D.6.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_7 | 6152 | 6877 | - | 3.D.6.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_8 | 6874 | 7500 | - | 3.D.6.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_9 | 7497 | 8426 | - | 3.D.6.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_10 | 8419 | 9759 | - | 3.D.6.1.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_11 | 9989 | 10204 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_12 | 10402 | 10674 | + | Acetyltransf_1 | Acetyltransf_10 | Acetyltransf_CG |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_13 | 10697 | 12583 | - | GH154 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_14 | 12667 | 13779 | - | GH88 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_15 | 13795 | 14676 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_16 | 14690 | 15601 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_17 | 15683 | 17341 | - | 3.A.1.1.10 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_18 | 17516 | 19750 | - | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4405 | ShaoY_2019_ERR3404906_bin.10_k141_4405_19 | 20021 | 21097 | + | PL38 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_5
Type: TC
Location: 4760 - 5548 (-)
Type: TC
Location: 4760 - 5548 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_6
Type: TC
Location: 5564 - 6139 (-)
Type: TC
Location: 5564 - 6139 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_7
Type: TC
Location: 6152 - 6877 (-)
Type: TC
Location: 6152 - 6877 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_8
Type: TC
Location: 6874 - 7500 (-)
Type: TC
Location: 6874 - 7500 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_9
Type: TC
Location: 7497 - 8426 (-)
Type: TC
Location: 7497 - 8426 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_10
Type: TC
Location: 8419 - 9759 (-)
Type: TC
Location: 8419 - 9759 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_11
Type:
Location: 9989 - 10204 (-)
Type:
Location: 9989 - 10204 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_12
Type: pfam
Location: 10402 - 10674 (+)
Type: pfam
Location: 10402 - 10674 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_13
Type: CAZyme
Location: 10697 - 12583 (-)
Type: CAZyme
Location: 10697 - 12583 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_14
Type: CAZyme
Location: 12667 - 13779 (-)
Type: CAZyme
Location: 12667 - 13779 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_15
Type: TC
Location: 13795 - 14676 (-)
Type: TC
Location: 13795 - 14676 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_16
Type: TC
Location: 14690 - 15601 (-)
Type: TC
Location: 14690 - 15601 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_17
Type: TC
Location: 15683 - 17341 (-)
Type: TC
Location: 15683 - 17341 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_18
Type: TF
Location: 17516 - 19750 (-)
Type: TF
Location: 17516 - 19750 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4405_19
Type: CAZyme
Location: 20021 - 21097 (+)
Type: CAZyme
Location: 20021 - 21097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.