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Cluster: ShaoY_2019_ERR3404906_bin.10_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_20 16403 18439 - 3.A.7.7.1
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_21 18692 19711 + 3.A.1.23.1
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_22 19698 20519 + 3.A.1.23.1
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_23 20561 21343 + 3.A.1.23.5
NULL(UNKNOWN) ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_24 21511 22146 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_25 22555 24180 - CBM91 | GH43_11
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_26 24247 25098 - 3.A.1.1.11
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_27 25111 26022 - 3.A.1.1.11
STP ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_28 26098 27474 - SBP_bac_1
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_29 27607 29361 - 8.A.59.2.1
TF ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_30 29365 30126 - HTH_AraC | HTH_AraC
sulfatase ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_31 30335 31762 - S1_23
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_32 31854 32663 - 3.A.1.9.1
pfam ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_33 32676 33497 - BPD_transp_1
TC ShaoY_2019_ERR3404906_bin.10_k141_4277 ShaoY_2019_ERR3404906_bin.10_k141_4277_34 33494 34252 - 3.A.1.9.2
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_20
Type: TC
Location: 16403 - 18439 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_21
Type: TC
Location: 18692 - 19711 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_22
Type: TC
Location: 19698 - 20519 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_23
Type: TC
Location: 20561 - 21343 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_24
Type:
Location: 21511 - 22146 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_25
Type: CAZyme
Location: 22555 - 24180 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_26
Type: TC
Location: 24247 - 25098 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_27
Type: TC
Location: 25111 - 26022 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_28
Type: STP
Location: 26098 - 27474 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_29
Type: TC
Location: 27607 - 29361 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_30
Type: TF
Location: 29365 - 30126 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_31
Type: sulfatase
Location: 30335 - 31762 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_32
Type: TC
Location: 31854 - 32663 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_33
Type: pfam
Location: 32676 - 33497 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4277_34
Type: TC
Location: 33494 - 34252 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Lacrimispora
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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