Cluster: ShaoY_2019_ERR3404906_bin.10_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_00680
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_35 | 35620 | 36753 | - | GH88 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_36 | 36737 | 38470 | - | GH154 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_37 | 38615 | 39979 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_38 | 40127 | 40966 | - | 3.A.1.1.11 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_39 | 40963 | 41895 | - | 3.A.1.1.11 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_40 | 42114 | 42848 | + | HTH_AraC |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_4059 | ShaoY_2019_ERR3404906_bin.10_k141_4059_41 | 42838 | 44646 | + | 9.B.33.1.1 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_35
Type: CAZyme
Location: 35620 - 36753 (-)
Type: CAZyme
Location: 35620 - 36753 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_36
Type: CAZyme
Location: 36737 - 38470 (-)
Type: CAZyme
Location: 36737 - 38470 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_37
Type: STP
Location: 38615 - 39979 (-)
Type: STP
Location: 38615 - 39979 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_38
Type: TC
Location: 40127 - 40966 (-)
Type: TC
Location: 40127 - 40966 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_39
Type: TC
Location: 40963 - 41895 (-)
Type: TC
Location: 40963 - 41895 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_40
Type: TF
Location: 42114 - 42848 (+)
Type: TF
Location: 42114 - 42848 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_4059_41
Type: TC
Location: 42838 - 44646 (+)
Type: TC
Location: 42838 - 44646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.