Cluster: ShaoY_2019_ERR3404906_bin.10_CGC22
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_50 | 56153 | 57016 | + | 3.A.1.8.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_51 | 57038 | 57706 | + | 3.A.1.8.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_52 | 57703 | 58749 | + | 3.A.1.10.3 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_53 | 58777 | 59352 | + | CTP_transf_3 | NTP_transf_3 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_54 | 59430 | 60794 | - | 2.A.66.1.26 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_55 | 61205 | 64309 | + | GH38 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_56 | 64344 | 65435 | + | GntR |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_57 | 65910 | 68000 | + | 3.A.1.5.12 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_58 | 68147 | 69142 | + | 3.A.1.5.12 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_59 | 69142 | 70290 | + | 3.A.1.5.12 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_60 | 70303 | 71322 | + | 3.A.1.5.29 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3973 | ShaoY_2019_ERR3404906_bin.10_k141_3973_61 | 71323 | 72315 | + | 3.A.1.5.29 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_50
Type: TC
Location: 56153 - 57016 (+)
Type: TC
Location: 56153 - 57016 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_51
Type: TC
Location: 57038 - 57706 (+)
Type: TC
Location: 57038 - 57706 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_52
Type: TC
Location: 57703 - 58749 (+)
Type: TC
Location: 57703 - 58749 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_53
Type: pfam
Location: 58777 - 59352 (+)
Type: pfam
Location: 58777 - 59352 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_54
Type: TC
Location: 59430 - 60794 (-)
Type: TC
Location: 59430 - 60794 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_55
Type: CAZyme
Location: 61205 - 64309 (+)
Type: CAZyme
Location: 61205 - 64309 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_56
Type: TF
Location: 64344 - 65435 (+)
Type: TF
Location: 64344 - 65435 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_57
Type: TC
Location: 65910 - 68000 (+)
Type: TC
Location: 65910 - 68000 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_58
Type: TC
Location: 68147 - 69142 (+)
Type: TC
Location: 68147 - 69142 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_59
Type: TC
Location: 69142 - 70290 (+)
Type: TC
Location: 69142 - 70290 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_60
Type: TC
Location: 70303 - 71322 (+)
Type: TC
Location: 70303 - 71322 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3973_61
Type: TC
Location: 71323 - 72315 (+)
Type: TC
Location: 71323 - 72315 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.