Cluster: ShaoY_2019_ERR3404906_bin.10_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_1 | 172 | 1680 | + | 3.A.1.1.9 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_2 | 1755 | 3020 | + | GH28 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_3 | 3099 | 5360 | - | GH95 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_4 | 5651 | 6388 | + | GntR |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_5 | 6447 | 7817 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_6 | 7881 | 8783 | + | 3.A.1.1.46 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_3536 | ShaoY_2019_ERR3404906_bin.10_k141_3536_7 | 8773 | 9603 | + | 3.A.1.1.44 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_1
Type: TC
Location: 172 - 1680 (+)
Type: TC
Location: 172 - 1680 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_2
Type: CAZyme
Location: 1755 - 3020 (+)
Type: CAZyme
Location: 1755 - 3020 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_3
Type: CAZyme
Location: 3099 - 5360 (-)
Type: CAZyme
Location: 3099 - 5360 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_4
Type: TF
Location: 5651 - 6388 (+)
Type: TF
Location: 5651 - 6388 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_5
Type: STP
Location: 6447 - 7817 (+)
Type: STP
Location: 6447 - 7817 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_6
Type: TC
Location: 7881 - 8783 (+)
Type: TC
Location: 7881 - 8783 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_3536_7
Type: TC
Location: 8773 - 9603 (+)
Type: TC
Location: 8773 - 9603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.