Cluster: ShaoY_2019_ERR3404906_bin.10_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- CGC Family ID: CGCFAM_00403
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_113 | 124759 | 125070 | + | 4.A.3.2.8 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_114 | 125099 | 126490 | + | 4.A.3.2.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_115 | 126571 | 126717 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_116 | 126733 | 128112 | + | GH1 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_117 | 128131 | 128580 | + | DUF3284 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_118 | 128624 | 129259 | + | GntR |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_119 | 129304 | 130398 | + | GH170 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_113
Type: TC
Location: 124759 - 125070 (+)
Type: TC
Location: 124759 - 125070 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_114
Type: TC
Location: 125099 - 126490 (+)
Type: TC
Location: 125099 - 126490 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_115
Type:
Location: 126571 - 126717 (+)
Type:
Location: 126571 - 126717 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_116
Type: CAZyme
Location: 126733 - 128112 (+)
Type: CAZyme
Location: 126733 - 128112 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_117
Type: pfam
Location: 128131 - 128580 (+)
Type: pfam
Location: 128131 - 128580 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_118
Type: TF
Location: 128624 - 129259 (+)
Type: TF
Location: 128624 - 129259 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_119
Type: CAZyme
Location: 129304 - 130398 (+)
Type: CAZyme
Location: 129304 - 130398 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.