Cluster: ShaoY_2019_ERR3404906_bin.10_CGC16
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_90 | 94716 | 95513 | + | CE6 |
| peptidase | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_91 | 95739 | 99497 | + | C56.UNW |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_92 | 99640 | 101544 | + | 2.A.3.14.3 |
| STP | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_93 | 101688 | 102995 | + | Pyr_redox_2 |
| peptidase | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_94 | 103063 | 104913 | - | C44.UNW |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_95 | 104939 | 106309 | - | 2.A.45.3.1 |
| pfam | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_96 | 106453 | 107976 | + | FGGY_N | FGGY_C |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_97 | 108025 | 109389 | + | 2.A.38.1.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_98 | 109393 | 110844 | + | 2.A.38.1.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_2285 | ShaoY_2019_ERR3404906_bin.10_k141_2285_99 | 110904 | 111986 | + | 4.A.1.2.2 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_90
Type: CAZyme
Location: 94716 - 95513 (+)
Type: CAZyme
Location: 94716 - 95513 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_91
Type: peptidase
Location: 95739 - 99497 (+)
Type: peptidase
Location: 95739 - 99497 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_92
Type: TC
Location: 99640 - 101544 (+)
Type: TC
Location: 99640 - 101544 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_93
Type: STP
Location: 101688 - 102995 (+)
Type: STP
Location: 101688 - 102995 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_94
Type: peptidase
Location: 103063 - 104913 (-)
Type: peptidase
Location: 103063 - 104913 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_95
Type: TC
Location: 104939 - 106309 (-)
Type: TC
Location: 104939 - 106309 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_96
Type: pfam
Location: 106453 - 107976 (+)
Type: pfam
Location: 106453 - 107976 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_97
Type: TC
Location: 108025 - 109389 (+)
Type: TC
Location: 108025 - 109389 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_98
Type: TC
Location: 109393 - 110844 (+)
Type: TC
Location: 109393 - 110844 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2285_99
Type: TC
Location: 110904 - 111986 (+)
Type: TC
Location: 110904 - 111986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.