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Cluster: ShaoY_2019_ERR3404906_bin.10_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_48 46119 47516 - GH4
TF ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_49 47649 48545 + HTH_AraC | HTH_AraC
CAZyme ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_50 48494 49612 - GH105
TF ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_51 49609 51132 - HTH_AraC
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_52 51125 52900 - 8.A.59.2.1
STP ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_53 53081 54427 + SBP_bac_1
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_54 54455 55384 + 3.A.1.1.11
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_55 55384 56244 + 3.A.1.1.11
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_56 57579 59309 + 3.A.1.135.7
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_57 59306 61096 + 3.A.1.135.7
pfam ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_58 62183 62641 + DNA_binding_1 | Methyltransf_1N
NULL(UNKNOWN) ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_59 62752 63459 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_60 63533 64111 - 3.A.1.3.24
TC ShaoY_2019_ERR3404906_bin.10_k141_2140 ShaoY_2019_ERR3404906_bin.10_k141_2140_61 64102 64872 - 3.A.1.16.3
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_48
Type: CAZyme
Location: 46119 - 47516 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_49
Type: TF
Location: 47649 - 48545 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_50
Type: CAZyme
Location: 48494 - 49612 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_51
Type: TF
Location: 49609 - 51132 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_52
Type: TC
Location: 51125 - 52900 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_53
Type: STP
Location: 53081 - 54427 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_54
Type: TC
Location: 54455 - 55384 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_55
Type: TC
Location: 55384 - 56244 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_56
Type: TC
Location: 57579 - 59309 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_57
Type: TC
Location: 59306 - 61096 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_58
Type: pfam
Location: 62183 - 62641 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_59
Type:
Location: 62752 - 63459 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_60
Type: TC
Location: 63533 - 64111 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_2140_61
Type: TC
Location: 64102 - 64872 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Lacrimispora
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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