Cluster: ShaoY_2019_ERR3404906_bin.10_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404906_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_26 | 26013 | 27362 | - | 2.A.3.8.12 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_27 | 27617 | 28186 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_28 | 28294 | 29214 | + | HTH_5 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_29 | 29685 | 31097 | + | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_30 | 31136 | 32035 | + | 3.A.1.1.36 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_31 | 32025 | 32855 | + | 3.A.1.1.36 |
| CAZyme | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_32 | 32881 | 34671 | + | GH2 |
| TF | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_33 | 34755 | 35129 | - | Fe_dep_repress |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_34 | 35402 | 36613 | + | 9.B.34.1.2 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_35 | 36644 | 37741 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_36 | 37776 | 38600 | - | 3.A.1.11.1 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_37 | 38600 | 39412 | - | 3.A.1.11.8 |
| TC | ShaoY_2019_ERR3404906_bin.10_k141_1396 | ShaoY_2019_ERR3404906_bin.10_k141_1396_38 | 39405 | 40481 | - | 3.A.1.11.8 |
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_26
Type: TC
Location: 26013 - 27362 (-)
Type: TC
Location: 26013 - 27362 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_27
Type:
Location: 27617 - 28186 (-)
Type:
Location: 27617 - 28186 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_28
Type: TF
Location: 28294 - 29214 (+)
Type: TF
Location: 28294 - 29214 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_29
Type: TC
Location: 29685 - 31097 (+)
Type: TC
Location: 29685 - 31097 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_30
Type: TC
Location: 31136 - 32035 (+)
Type: TC
Location: 31136 - 32035 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_31
Type: TC
Location: 32025 - 32855 (+)
Type: TC
Location: 32025 - 32855 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_32
Type: CAZyme
Location: 32881 - 34671 (+)
Type: CAZyme
Location: 32881 - 34671 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_33
Type: TF
Location: 34755 - 35129 (-)
Type: TF
Location: 34755 - 35129 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_34
Type: TC
Location: 35402 - 36613 (+)
Type: TC
Location: 35402 - 36613 (+)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_35
Type: TC
Location: 36644 - 37741 (-)
Type: TC
Location: 36644 - 37741 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_36
Type: TC
Location: 37776 - 38600 (-)
Type: TC
Location: 37776 - 38600 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_37
Type: TC
Location: 38600 - 39412 (-)
Type: TC
Location: 38600 - 39412 (-)
Gene ID: ShaoY_2019_ERR3404906_bin.10_k141_1396_38
Type: TC
Location: 39405 - 40481 (-)
Type: TC
Location: 39405 - 40481 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lacrimispora
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.