Cluster: ShaoY_2019_ERR3404835_bin.5_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- CGC Family ID: CGCFAM_01076
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_20 | 16052 | 16909 | + | 3.A.1.24.6 |
| STP | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_21 | 16980 | 17645 | + | Nitroreductase |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_22 | 17687 | 19591 | - | 4.A.1.2.2 |
| TF | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_23 | 19764 | 20483 | + | GntR |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_24 | 20493 | 22169 | + | GH13_29 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_752 | ShaoY_2019_ERR3404835_bin.5_k141_752_25 | 22241 | 23101 | + | 8.A.5.1.4 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_20
Type: TC
Location: 16052 - 16909 (+)
Type: TC
Location: 16052 - 16909 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_21
Type: STP
Location: 16980 - 17645 (+)
Type: STP
Location: 16980 - 17645 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_22
Type: TC
Location: 17687 - 19591 (-)
Type: TC
Location: 17687 - 19591 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_23
Type: TF
Location: 19764 - 20483 (+)
Type: TF
Location: 19764 - 20483 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_24
Type: CAZyme
Location: 20493 - 22169 (+)
Type: CAZyme
Location: 20493 - 22169 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_752_25
Type: TC
Location: 22241 - 23101 (+)
Type: TC
Location: 22241 - 23101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.