Cluster: ShaoY_2019_ERR3404835_bin.5_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_538 | ShaoY_2019_ERR3404835_bin.5_k141_538_3 | 1659 | 2690 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_538 | ShaoY_2019_ERR3404835_bin.5_k141_538_4 | 2683 | 3894 | - | GT4 |
| STP | ShaoY_2019_ERR3404835_bin.5_k141_538 | ShaoY_2019_ERR3404835_bin.5_k141_538_5 | 4032 | 4298 | - | PTS-HPr |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404835_bin.5_k141_538 | ShaoY_2019_ERR3404835_bin.5_k141_538_6 | 4385 | 4564 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_538 | ShaoY_2019_ERR3404835_bin.5_k141_538_7 | 4745 | 6970 | + | 3.A.9.1.2 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_538_3
Type: CAZyme
Location: 1659 - 2690 (-)
Type: CAZyme
Location: 1659 - 2690 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_538_4
Type: CAZyme
Location: 2683 - 3894 (-)
Type: CAZyme
Location: 2683 - 3894 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_538_5
Type: STP
Location: 4032 - 4298 (-)
Type: STP
Location: 4032 - 4298 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_538_6
Type:
Location: 4385 - 4564 (-)
Type:
Location: 4385 - 4564 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_538_7
Type: TC
Location: 4745 - 6970 (+)
Type: TC
Location: 4745 - 6970 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.