Cluster: ShaoY_2019_ERR3404835_bin.5_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_3777 | ShaoY_2019_ERR3404835_bin.5_k141_3777_20 | 23367 | 24893 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_3777 | ShaoY_2019_ERR3404835_bin.5_k141_3777_21 | 24896 | 26389 | + | GT4 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_3777 | ShaoY_2019_ERR3404835_bin.5_k141_3777_22 | 26811 | 27656 | + | 3.A.1.24.3 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_3777 | ShaoY_2019_ERR3404835_bin.5_k141_3777_23 | 27674 | 28738 | + | 3.A.1.24.3 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_3777 | ShaoY_2019_ERR3404835_bin.5_k141_3777_24 | 28731 | 29432 | + | 3.A.1.24.3 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_3777_20
Type: CAZyme
Location: 23367 - 24893 (+)
Type: CAZyme
Location: 23367 - 24893 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_3777_21
Type: CAZyme
Location: 24896 - 26389 (+)
Type: CAZyme
Location: 24896 - 26389 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_3777_22
Type: TC
Location: 26811 - 27656 (+)
Type: TC
Location: 26811 - 27656 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_3777_23
Type: TC
Location: 27674 - 28738 (+)
Type: TC
Location: 27674 - 28738 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_3777_24
Type: TC
Location: 28731 - 29432 (+)
Type: TC
Location: 28731 - 29432 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.