dbCAN HGM

Cluster: ShaoY_2019_ERR3404835_bin.5_CGC15

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 14
CAZyme Count: 5
Substrate:
Genome ID: ShaoY_2019_ERR3404835_bin.5
CGC Family ID: CGCFAM_11114
Continent: Europe
Source Study: Zeng et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_2	668	1789	-	CBM34 \| GH13_20
CAZyme	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_3	1803	4196	-	GT35
CAZyme	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_4	4207	5637	-	GT5
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_5	5642	6787	-	NTP_transferase \| Hexapep_GlmU
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_6	6774	7919	-	NTP_transferase \| Hexapep_GlmU
CAZyme	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_7	7934	9832	-	CBM48 \| GH13_9
CAZyme	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_8	10115	11902	+	GH13_39
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_9	11995	12360	-	Ribosomal_L12 \| Ribosomal_L12_N
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_10	12423	12926	-	Ribosomal_L10
TC	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_11	13194	13916	+	9.B.120.1.5
TC	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_12	14009	15331	+	2.A.3.8.12
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_13	15377	16645	-	Voltage_CLC
pfam	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_14	16769	17593	+	Beta-lactamase2
TC	ShaoY_2019_ERR3404835_bin.5_k141_2664	ShaoY_2019_ERR3404835_bin.5_k141_2664_15	17645	18337	-	1.C.82.1.1

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_2
Type: CAZyme
Location: 668 - 1789 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_3
Type: CAZyme
Location: 1803 - 4196 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_4
Type: CAZyme
Location: 4207 - 5637 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_5
Type: pfam
Location: 5642 - 6787 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_6
Type: pfam
Location: 6774 - 7919 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_7
Type: CAZyme
Location: 7934 - 9832 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_8
Type: CAZyme
Location: 10115 - 11902 (+)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_9
Type: pfam
Location: 11995 - 12360 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_10
Type: pfam
Location: 12423 - 12926 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_11
Type: TC
Location: 13194 - 13916 (+)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_12
Type: TC
Location: 14009 - 15331 (+)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_13
Type: pfam
Location: 15377 - 16645 (-)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_14
Type: pfam
Location: 16769 - 17593 (+)

Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2664_15
Type: TC
Location: 17645 - 18337 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacillota

→

Class

Bacilli

→

Order

Lactobacillales

→

Family

Lactobacillaceae

→

Genus

Limosilactobacillus

→

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List