Cluster: ShaoY_2019_ERR3404835_bin.5_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_35 | 27817 | 29292 | - | GH32 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_36 | 29441 | 30574 | + | CE9 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_37 | 30674 | 32623 | + | 4.A.1.2.12 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_38 | 32953 | 33534 | + | PEP_mutase |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_39 | 33547 | 34452 | + | ICL | PEP_mutase |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_40 | 34464 | 35147 | + | 2.A.1.1.115 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_41 | 35152 | 35796 | + | Sugar_tr | MFS_1 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_42 | 35874 | 36458 | + | 3.D.1.8.1 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_43 | 36814 | 38202 | + | Lyase_1 | FumaraseC_C |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_44 | 38217 | 39608 | + | 3.D.10.1.4 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_45 | 39737 | 40690 | + | Ldh_1_N | Ldh_1_C |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2561 | ShaoY_2019_ERR3404835_bin.5_k141_2561_46 | 40714 | 42180 | + | 2.A.47.3.4 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_35
Type: CAZyme
Location: 27817 - 29292 (-)
Type: CAZyme
Location: 27817 - 29292 (-)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_36
Type: CAZyme
Location: 29441 - 30574 (+)
Type: CAZyme
Location: 29441 - 30574 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_37
Type: TC
Location: 30674 - 32623 (+)
Type: TC
Location: 30674 - 32623 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_38
Type: pfam
Location: 32953 - 33534 (+)
Type: pfam
Location: 32953 - 33534 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_39
Type: pfam
Location: 33547 - 34452 (+)
Type: pfam
Location: 33547 - 34452 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_40
Type: TC
Location: 34464 - 35147 (+)
Type: TC
Location: 34464 - 35147 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_41
Type: pfam
Location: 35152 - 35796 (+)
Type: pfam
Location: 35152 - 35796 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_42
Type: TC
Location: 35874 - 36458 (+)
Type: TC
Location: 35874 - 36458 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_43
Type: pfam
Location: 36814 - 38202 (+)
Type: pfam
Location: 36814 - 38202 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_44
Type: TC
Location: 38217 - 39608 (+)
Type: TC
Location: 38217 - 39608 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_45
Type: pfam
Location: 39737 - 40690 (+)
Type: pfam
Location: 39737 - 40690 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2561_46
Type: TC
Location: 40714 - 42180 (+)
Type: TC
Location: 40714 - 42180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.