Cluster: ShaoY_2019_ERR3404835_bin.5_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404835_bin.5
- CGC Family ID: CGCFAM_11048
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_41 | 39594 | 40937 | + | 2.A.2.6.2 |
| CAZyme | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_42 | 40960 | 43212 | + | GH65 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_43 | 43224 | 43886 | + | Hydrolase | HAD_2 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_44 | 44017 | 45126 | + | 9.B.141.1.3 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_45 | 45127 | 45897 | + | 9.B.141.1.2 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_46 | 46162 | 46872 | + | 3.A.2.1.1 |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_47 | 46903 | 47115 | + | ATP-synt_C |
| pfam | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_48 | 47159 | 47668 | + | ATP-synt_B | Mt_ATP-synt_B |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_49 | 47673 | 48200 | + | 3.A.2.1.1 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_50 | 48230 | 49762 | + | 3.A.2.1.2 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_51 | 49793 | 50716 | + | 3.A.2.1.1 |
| TC | ShaoY_2019_ERR3404835_bin.5_k141_2482 | ShaoY_2019_ERR3404835_bin.5_k141_2482_52 | 50732 | 52147 | + | 3.A.2.1.5 |
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_41
Type: TC
Location: 39594 - 40937 (+)
Type: TC
Location: 39594 - 40937 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_42
Type: CAZyme
Location: 40960 - 43212 (+)
Type: CAZyme
Location: 40960 - 43212 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_43
Type: pfam
Location: 43224 - 43886 (+)
Type: pfam
Location: 43224 - 43886 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_44
Type: TC
Location: 44017 - 45126 (+)
Type: TC
Location: 44017 - 45126 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_45
Type: TC
Location: 45127 - 45897 (+)
Type: TC
Location: 45127 - 45897 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_46
Type: TC
Location: 46162 - 46872 (+)
Type: TC
Location: 46162 - 46872 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_47
Type: pfam
Location: 46903 - 47115 (+)
Type: pfam
Location: 46903 - 47115 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_48
Type: pfam
Location: 47159 - 47668 (+)
Type: pfam
Location: 47159 - 47668 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_49
Type: TC
Location: 47673 - 48200 (+)
Type: TC
Location: 47673 - 48200 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_50
Type: TC
Location: 48230 - 49762 (+)
Type: TC
Location: 48230 - 49762 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_51
Type: TC
Location: 49793 - 50716 (+)
Type: TC
Location: 49793 - 50716 (+)
Gene ID: ShaoY_2019_ERR3404835_bin.5_k141_2482_52
Type: TC
Location: 50732 - 52147 (+)
Type: TC
Location: 50732 - 52147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.