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Cluster: ShaoY_2019_ERR3404829_bin.1_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_64 75119 76369 + 3.A.1.1.44
TC ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_65 76508 77491 + 3.A.1.1.36
TC ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_66 77484 78308 + 3.A.1.1.36
CAZyme ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_67 78314 79693 + GH29
pfam ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_68 79914 80840 - AP_endonuc_2
TC ShaoY_2019_ERR3404829_bin.1_k141_479 ShaoY_2019_ERR3404829_bin.1_k141_479_69 80977 82635 - 2.A.1.1.26
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_64
Type: TC
Location: 75119 - 76369 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_65
Type: TC
Location: 76508 - 77491 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_66
Type: TC
Location: 77484 - 78308 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_67
Type: CAZyme
Location: 78314 - 79693 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_68
Type: pfam
Location: 79914 - 80840 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_479_69
Type: TC
Location: 80977 - 82635 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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