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Cluster: ShaoY_2019_ERR3404829_bin.1_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_67 86843 88390 + 3.D.4.3.2
TC ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_68 88405 89526 + 3.D.4.3.2
TC ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_69 89642 91318 + 3.A.1.129.1
TC ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_70 91315 93069 + 3.A.1.129.1
STP ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_71 93066 94712 + GAF | HATPase_c
CAZyme ShaoY_2019_ERR3404829_bin.1_k141_1680 ShaoY_2019_ERR3404829_bin.1_k141_1680_72 94819 98367 - CBM47 | GH29
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_67
Type: TC
Location: 86843 - 88390 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_68
Type: TC
Location: 88405 - 89526 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_69
Type: TC
Location: 89642 - 91318 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_70
Type: TC
Location: 91315 - 93069 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_71
Type: STP
Location: 93066 - 94712 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_1680_72
Type: CAZyme
Location: 94819 - 98367 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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