Cluster: ShaoY_2019_ERR3404829_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3404829_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_83 | 85540 | 86550 | - | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_84 | 86582 | 87193 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_85 | 87238 | 89790 | - | GH3 |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_86 | 89820 | 90728 | + | S6PP | Hydrolase_3 |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_87 | 90725 | 91987 | + | 2.A.1.21.21 |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_88 | 92094 | 92324 | + | 4.A.1.1.1 |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_89 | 92321 | 92794 | + | 4.A.1.2.6 |
| CAZyme | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_90 | 92867 | 95017 | - | GH77 |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_91 | 95052 | 95342 | - | PTS_EIIB |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_92 | 95614 | 97296 | - | 3.A.1.120.6 |
| pfam | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_93 | 97615 | 98499 | + | BPL_C | BPL_LplA_LipB |
| sulfatase | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_94 | 98486 | 100279 | + | S1_37 |
| TC | ShaoY_2019_ERR3404829_bin.1_k141_990 | ShaoY_2019_ERR3404829_bin.1_k141_990_95 | 100276 | 101832 | + | 3.B.1.1.5 |
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_83
Type: CAZyme
Location: 85540 - 86550 (-)
Type: CAZyme
Location: 85540 - 86550 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_84
Type:
Location: 86582 - 87193 (-)
Type:
Location: 86582 - 87193 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_85
Type: CAZyme
Location: 87238 - 89790 (-)
Type: CAZyme
Location: 87238 - 89790 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_86
Type: pfam
Location: 89820 - 90728 (+)
Type: pfam
Location: 89820 - 90728 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_87
Type: TC
Location: 90725 - 91987 (+)
Type: TC
Location: 90725 - 91987 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_88
Type: TC
Location: 92094 - 92324 (+)
Type: TC
Location: 92094 - 92324 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_89
Type: TC
Location: 92321 - 92794 (+)
Type: TC
Location: 92321 - 92794 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_90
Type: CAZyme
Location: 92867 - 95017 (-)
Type: CAZyme
Location: 92867 - 95017 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_91
Type: pfam
Location: 95052 - 95342 (-)
Type: pfam
Location: 95052 - 95342 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_92
Type: TC
Location: 95614 - 97296 (-)
Type: TC
Location: 95614 - 97296 (-)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_93
Type: pfam
Location: 97615 - 98499 (+)
Type: pfam
Location: 97615 - 98499 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_94
Type: sulfatase
Location: 98486 - 100279 (+)
Type: sulfatase
Location: 98486 - 100279 (+)
Gene ID: ShaoY_2019_ERR3404829_bin.1_k141_990_95
Type: TC
Location: 100276 - 101832 (+)
Type: TC
Location: 100276 - 101832 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia sp018375675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.