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Cluster: ShaoY_2019_ERR3404727_bin.4_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_1 1 1695 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_2 1762 3201 + GH1
TF ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_3 3469 4506 - LacI
CAZyme ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_4 4848 6290 + GH1
TC ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_5 6467 8227 + 4.A.3.1.1
TF ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_6 8641 9651 - LacI
TC ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_7 9928 11706 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404727_bin.4_k141_2551 ShaoY_2019_ERR3404727_bin.4_k141_2551_8 11782 13203 + GH1
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_1
Type: TC
Location: 1 - 1695 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_2
Type: CAZyme
Location: 1762 - 3201 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_3
Type: TF
Location: 3469 - 4506 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_4
Type: CAZyme
Location: 4848 - 6290 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_5
Type: TC
Location: 6467 - 8227 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_6
Type: TF
Location: 8641 - 9651 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_7
Type: TC
Location: 9928 - 11706 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_2551_8
Type: CAZyme
Location: 11782 - 13203 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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