Cluster: ShaoY_2019_ERR3404727_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404727_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404727_bin.4_k141_1230 | ShaoY_2019_ERR3404727_bin.4_k141_1230_17 | 16852 | 17778 | - | CE7 |
| TC | ShaoY_2019_ERR3404727_bin.4_k141_1230 | ShaoY_2019_ERR3404727_bin.4_k141_1230_18 | 17910 | 18737 | - | 3.A.1.5.27 |
| TC | ShaoY_2019_ERR3404727_bin.4_k141_1230 | ShaoY_2019_ERR3404727_bin.4_k141_1230_19 | 18738 | 20753 | - | 3.A.1.5.25 |
| TC | ShaoY_2019_ERR3404727_bin.4_k141_1230 | ShaoY_2019_ERR3404727_bin.4_k141_1230_20 | 20757 | 21713 | - | 3.A.1.5.38 |
| TC | ShaoY_2019_ERR3404727_bin.4_k141_1230 | ShaoY_2019_ERR3404727_bin.4_k141_1230_21 | 21871 | 23484 | - | 3.A.1.5.27 |
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_1230_17
Type: CAZyme
Location: 16852 - 17778 (-)
Type: CAZyme
Location: 16852 - 17778 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_1230_18
Type: TC
Location: 17910 - 18737 (-)
Type: TC
Location: 17910 - 18737 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_1230_19
Type: TC
Location: 18738 - 20753 (-)
Type: TC
Location: 18738 - 20753 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_1230_20
Type: TC
Location: 20757 - 21713 (-)
Type: TC
Location: 20757 - 21713 (-)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_1230_21
Type: TC
Location: 21871 - 23484 (-)
Type: TC
Location: 21871 - 23484 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.