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Cluster: ShaoY_2019_ERR3404727_bin.4_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_1 280 723 + 4.A.6.1.16
pfam ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_2 723 1004 + YajC
TC ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_3 1041 1523 + 4.A.6.1.4
TC ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_4 1614 2414 + 4.A.6.1.4
TC ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_5 2404 3486 + 4.A.6.1.4
TF ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_6 3672 4403 + GntR
STP ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_7 4518 5684 + SIS | SIS
CAZyme ShaoY_2019_ERR3404727_bin.4_k141_5167 ShaoY_2019_ERR3404727_bin.4_k141_5167_8 5802 6623 + CE9
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_1
Type: TC
Location: 280 - 723 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_2
Type: pfam
Location: 723 - 1004 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_3
Type: TC
Location: 1041 - 1523 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_4
Type: TC
Location: 1614 - 2414 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_5
Type: TC
Location: 2404 - 3486 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_6
Type: TF
Location: 3672 - 4403 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_7
Type: STP
Location: 4518 - 5684 (+)
Gene ID: ShaoY_2019_ERR3404727_bin.4_k141_5167_8
Type: CAZyme
Location: 5802 - 6623 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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