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Cluster: ShaoY_2019_ERR3404711_bin.5_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_8 4427 5596 - CE9
STP ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_9 5714 6880 - SIS | SIS
TF ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_10 6995 7726 - GntR
TC ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_11 7912 8994 - 4.A.6.1.4
TC ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_12 8984 9784 - 4.A.6.1.4
TC ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_13 9875 10357 - 4.A.6.1.4
pfam ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_14 10394 10675 - YajC
TC ShaoY_2019_ERR3404711_bin.5_k141_1703 ShaoY_2019_ERR3404711_bin.5_k141_1703_15 10675 11118 - 4.A.6.1.16
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_8
Type: CAZyme
Location: 4427 - 5596 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_9
Type: STP
Location: 5714 - 6880 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_10
Type: TF
Location: 6995 - 7726 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_11
Type: TC
Location: 7912 - 8994 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_12
Type: TC
Location: 8984 - 9784 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_13
Type: TC
Location: 9875 - 10357 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_14
Type: pfam
Location: 10394 - 10675 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1703_15
Type: TC
Location: 10675 - 11118 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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