Cluster: ShaoY_2019_ERR3404711_bin.5_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404711_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_51 | 57637 | 58431 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_52 | 58424 | 59347 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_53 | 59552 | 60532 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_54 | 60692 | 61477 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_55 | 61727 | 63130 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_56 | 63312 | 63875 | - | 4.A.1.2.6 |
| peptidase | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_57 | 64120 | 65019 | + | S09.UPW |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_58 | 65067 | 65387 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_59 | 65509 | 67869 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_60 | 67991 | 69187 | + | 2.A.1.2.18 |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_1631 | ShaoY_2019_ERR3404711_bin.5_k141_1631_61 | 69370 | 70746 | + | GH13_20 |
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_51
Type: TC
Location: 57637 - 58431 (-)
Type: TC
Location: 57637 - 58431 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_52
Type: TC
Location: 58424 - 59347 (-)
Type: TC
Location: 58424 - 59347 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_53
Type: TC
Location: 59552 - 60532 (-)
Type: TC
Location: 59552 - 60532 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_54
Type:
Location: 60692 - 61477 (-)
Type:
Location: 60692 - 61477 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_55
Type: pfam
Location: 61727 - 63130 (-)
Type: pfam
Location: 61727 - 63130 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_56
Type: TC
Location: 63312 - 63875 (-)
Type: TC
Location: 63312 - 63875 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_57
Type: peptidase
Location: 64120 - 65019 (+)
Type: peptidase
Location: 64120 - 65019 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_58
Type:
Location: 65067 - 65387 (+)
Type:
Location: 65067 - 65387 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_59
Type: TC
Location: 65509 - 67869 (+)
Type: TC
Location: 65509 - 67869 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_60
Type: TC
Location: 67991 - 69187 (+)
Type: TC
Location: 67991 - 69187 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_1631_61
Type: CAZyme
Location: 69370 - 70746 (+)
Type: CAZyme
Location: 69370 - 70746 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.