Cluster: ShaoY_2019_ERR3404711_bin.5_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3404711_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_39 | 46152 | 46490 | - | 4.A.3.1.2 |
| TF | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_40 | 46705 | 47709 | - | LacI |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_41 | 48066 | 49832 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_42 | 49899 | 51338 | + | GH1 |
| TF | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_43 | 51616 | 52653 | - | LacI |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_44 | 52995 | 54437 | + | GH1 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_45 | 54614 | 56374 | + | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_46 | 56712 | 57722 | - | LacI |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_47 | 58101 | 59777 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_48 | 59854 | 61275 | + | GH1 |
| pfam | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_49 | 61643 | 62875 | + | Fic |
| STP | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_50 | 62924 | 63253 | - | DeoRC |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6769 | ShaoY_2019_ERR3404711_bin.5_k141_6769_51 | 63416 | 65110 | - | 4.A.3.1.1 |
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_39
Type: TC
Location: 46152 - 46490 (-)
Type: TC
Location: 46152 - 46490 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_40
Type: TF
Location: 46705 - 47709 (-)
Type: TF
Location: 46705 - 47709 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_41
Type: TC
Location: 48066 - 49832 (+)
Type: TC
Location: 48066 - 49832 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_42
Type: CAZyme
Location: 49899 - 51338 (+)
Type: CAZyme
Location: 49899 - 51338 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_43
Type: TF
Location: 51616 - 52653 (-)
Type: TF
Location: 51616 - 52653 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_44
Type: CAZyme
Location: 52995 - 54437 (+)
Type: CAZyme
Location: 52995 - 54437 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_45
Type: TC
Location: 54614 - 56374 (+)
Type: TC
Location: 54614 - 56374 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_46
Type: TF
Location: 56712 - 57722 (-)
Type: TF
Location: 56712 - 57722 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_47
Type: TC
Location: 58101 - 59777 (+)
Type: TC
Location: 58101 - 59777 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_48
Type: CAZyme
Location: 59854 - 61275 (+)
Type: CAZyme
Location: 59854 - 61275 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_49
Type: pfam
Location: 61643 - 62875 (+)
Type: pfam
Location: 61643 - 62875 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_50
Type: STP
Location: 62924 - 63253 (-)
Type: STP
Location: 62924 - 63253 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6769_51
Type: TC
Location: 63416 - 65110 (-)
Type: TC
Location: 63416 - 65110 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.