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Cluster: ShaoY_2019_ERR3404711_bin.5_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_10 13668 15350 + 2.A.66.4.4
pfam ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_11 15357 17297 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_12 17663 19276 + 3.A.1.5.27
TC ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_13 19434 20390 + 3.A.1.5.38
TC ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_14 20394 22409 + 3.A.1.5.25
TC ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_15 22410 23237 + 3.A.1.5.27
CAZyme ShaoY_2019_ERR3404711_bin.5_k141_6764 ShaoY_2019_ERR3404711_bin.5_k141_6764_16 23411 24295 + CE7
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_10
Type: TC
Location: 13668 - 15350 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_11
Type: pfam
Location: 15357 - 17297 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_12
Type: TC
Location: 17663 - 19276 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_13
Type: TC
Location: 19434 - 20390 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_14
Type: TC
Location: 20394 - 22409 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_15
Type: TC
Location: 22410 - 23237 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6764_16
Type: CAZyme
Location: 23411 - 24295 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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