Cluster: ShaoY_2019_ERR3404711_bin.5_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3404711_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_55 | 72331 | 74145 | + | GH154 |
| pfam | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_56 | 74299 | 74730 | + | EIIA-man |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_57 | 74783 | 75271 | + | 4.A.6.1.3 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_58 | 75342 | 76244 | + | 4.A.6.1.22 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_59 | 76237 | 77100 | + | 4.A.6.1.19 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_60 | 77180 | 77833 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_61 | 77814 | 78965 | + | GH88 |
| pfam | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_62 | 79141 | 79905 | + | CN_hydrolase |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_63 | 79905 | 81536 | + | CBM91 | GH43_11 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_64 | 81547 | 82404 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_65 | 82423 | 83646 | + | GH28 |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_6599 | ShaoY_2019_ERR3404711_bin.5_k141_6599_66 | 83655 | 85361 | + | GH154 |
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_55
Type: CAZyme
Location: 72331 - 74145 (+)
Type: CAZyme
Location: 72331 - 74145 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_56
Type: pfam
Location: 74299 - 74730 (+)
Type: pfam
Location: 74299 - 74730 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_57
Type: TC
Location: 74783 - 75271 (+)
Type: TC
Location: 74783 - 75271 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_58
Type: TC
Location: 75342 - 76244 (+)
Type: TC
Location: 75342 - 76244 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_59
Type: TC
Location: 76237 - 77100 (+)
Type: TC
Location: 76237 - 77100 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_60
Type:
Location: 77180 - 77833 (+)
Type:
Location: 77180 - 77833 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_61
Type: CAZyme
Location: 77814 - 78965 (+)
Type: CAZyme
Location: 77814 - 78965 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_62
Type: pfam
Location: 79141 - 79905 (+)
Type: pfam
Location: 79141 - 79905 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_63
Type: CAZyme
Location: 79905 - 81536 (+)
Type: CAZyme
Location: 79905 - 81536 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_64
Type:
Location: 81547 - 82404 (+)
Type:
Location: 81547 - 82404 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_65
Type: CAZyme
Location: 82423 - 83646 (+)
Type: CAZyme
Location: 82423 - 83646 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_6599_66
Type: CAZyme
Location: 83655 - 85361 (+)
Type: CAZyme
Location: 83655 - 85361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.