Cluster: ShaoY_2019_ERR3404711_bin.5_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404711_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_11 | 11843 | 13348 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_12 | 13478 | 15745 | + | GT35 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_13 | 16282 | 17478 | - | 3.A.1.1.22 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_14 | 17547 | 18386 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_15 | 18386 | 19240 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_16 | 19328 | 20644 | - | 3.A.1.1.45 |
| TF | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_17 | 20949 | 21668 | - | GntR |
| NULL(UNKNOWN) | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_18 | 21755 | 21871 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3404711_bin.5_k141_3114 | ShaoY_2019_ERR3404711_bin.5_k141_3114_19 | 21893 | 24346 | + | 4.A.1.1.8 |
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_11
Type: CAZyme
Location: 11843 - 13348 (+)
Type: CAZyme
Location: 11843 - 13348 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_12
Type: CAZyme
Location: 13478 - 15745 (+)
Type: CAZyme
Location: 13478 - 15745 (+)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_13
Type: TC
Location: 16282 - 17478 (-)
Type: TC
Location: 16282 - 17478 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_14
Type: TC
Location: 17547 - 18386 (-)
Type: TC
Location: 17547 - 18386 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_15
Type: TC
Location: 18386 - 19240 (-)
Type: TC
Location: 18386 - 19240 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_16
Type: TC
Location: 19328 - 20644 (-)
Type: TC
Location: 19328 - 20644 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_17
Type: TF
Location: 20949 - 21668 (-)
Type: TF
Location: 20949 - 21668 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_18
Type:
Location: 21755 - 21871 (-)
Type:
Location: 21755 - 21871 (-)
Gene ID: ShaoY_2019_ERR3404711_bin.5_k141_3114_19
Type: TC
Location: 21893 - 24346 (+)
Type: TC
Location: 21893 - 24346 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.