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Cluster: ShaoY_2019_ERR3404650_bin.5_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_21 22175 23344 - CE9
STP ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_22 23460 24626 - SIS | SIS
TF ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_23 24738 25472 - GntR
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_24 25560 25988 - 4.A.6.1.8
NULL(UNKNOWN) ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_25 26070 26693 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_26 26882 27721 - 4.A.6.1.18
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_27 27711 28598 - 4.A.6.1.18
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_28 28691 29155 - 4.A.6.1.18
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_29 29158 30954 - GH35
pfam ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_30 31440 31913 - DUF386
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_31 31946 33115 - CE9
TF ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_32 33259 33990 - GntR
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_33 34223 35779 - 4.A.1.1.7
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_21
Type: CAZyme
Location: 22175 - 23344 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_22
Type: STP
Location: 23460 - 24626 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_23
Type: TF
Location: 24738 - 25472 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_24
Type: TC
Location: 25560 - 25988 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_25
Type:
Location: 26070 - 26693 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_26
Type: TC
Location: 26882 - 27721 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_27
Type: TC
Location: 27711 - 28598 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_28
Type: TC
Location: 28691 - 29155 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_29
Type: CAZyme
Location: 29158 - 30954 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_30
Type: pfam
Location: 31440 - 31913 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_31
Type: CAZyme
Location: 31946 - 33115 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_32
Type: TF
Location: 33259 - 33990 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_33
Type: TC
Location: 34223 - 35779 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404650_bin.5_k119_6344_26 vegetarian > vegan 2.37913 0.01945
ShaoY_2019_ERR3404650_bin.5_k119_6344_28 vegetarian > vegan 3.45608 0.01882
ShaoY_2019_ERR3404650_bin.5_k119_6344_29 vegetarian > vegan 2.82335 0.01945
ShaoY_2019_ERR3404650_bin.5_k119_6344_32 vegetarian > vegan 3.26458 0.01882

🧭 Explore Read Mapping of CGC

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