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Cluster: ShaoY_2019_ERR3404650_bin.5_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_6 4882 5220 - 4.A.3.1.2
TF ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_7 5435 6439 - LacI
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_8 6797 8563 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_9 8630 10069 + GH1
TF ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_10 10415 11425 - LacI
TC ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_11 11701 13479 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_6344 ShaoY_2019_ERR3404650_bin.5_k119_6344_12 13556 14977 + GH1
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_6
Type: TC
Location: 4882 - 5220 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_7
Type: TF
Location: 5435 - 6439 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_8
Type: TC
Location: 6797 - 8563 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_9
Type: CAZyme
Location: 8630 - 10069 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_10
Type: TF
Location: 10415 - 11425 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_11
Type: TC
Location: 11701 - 13479 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_6344_12
Type: CAZyme
Location: 13556 - 14977 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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