Cluster: ShaoY_2019_ERR3404650_bin.5_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404650_bin.5
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_74 | 76202 | 78541 | - | 3.A.3.5.15 |
| STP | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_75 | 79034 | 81118 | - | Pkinase |
| STP | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_76 | 81290 | 82252 | - | FHA |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_77 | 82760 | 85009 | + | 1.I.1.1.3 |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_78 | 85457 | 85969 | + | 4.A.1.1.1 |
| pfam | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_79 | 85976 | 86503 | + | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_80 | 86942 | 88558 | + | 4.A.1.1.3 |
| CAZyme | ShaoY_2019_ERR3404650_bin.5_k119_2677 | ShaoY_2019_ERR3404650_bin.5_k119_2677_81 | 88562 | 89944 | + | GH4 |
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_74
Type: TC
Location: 76202 - 78541 (-)
Type: TC
Location: 76202 - 78541 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_75
Type: STP
Location: 79034 - 81118 (-)
Type: STP
Location: 79034 - 81118 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_76
Type: STP
Location: 81290 - 82252 (-)
Type: STP
Location: 81290 - 82252 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_77
Type: TC
Location: 82760 - 85009 (+)
Type: TC
Location: 82760 - 85009 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_78
Type: TC
Location: 85457 - 85969 (+)
Type: TC
Location: 85457 - 85969 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_79
Type: pfam
Location: 85976 - 86503 (+)
Type: pfam
Location: 85976 - 86503 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_80
Type: TC
Location: 86942 - 88558 (+)
Type: TC
Location: 86942 - 88558 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_2677_81
Type: CAZyme
Location: 88562 - 89944 (+)
Type: CAZyme
Location: 88562 - 89944 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.