Cluster: ShaoY_2019_ERR3404650_bin.5_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3404650_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_11 | 20075 | 22525 | - | 4.A.1.1.8 |
| TF | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_12 | 22755 | 23474 | + | GntR |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_13 | 23781 | 25097 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_14 | 25185 | 26039 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_15 | 26039 | 26878 | + | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_16 | 26947 | 28146 | + | 3.A.1.1.22 |
| CAZyme | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_17 | 28602 | 30869 | - | GT35 |
| CAZyme | ShaoY_2019_ERR3404650_bin.5_k119_9232 | ShaoY_2019_ERR3404650_bin.5_k119_9232_18 | 30999 | 32504 | - | GH77 |
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_11
Type: TC
Location: 20075 - 22525 (-)
Type: TC
Location: 20075 - 22525 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_12
Type: TF
Location: 22755 - 23474 (+)
Type: TF
Location: 22755 - 23474 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_13
Type: TC
Location: 23781 - 25097 (+)
Type: TC
Location: 23781 - 25097 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_14
Type: TC
Location: 25185 - 26039 (+)
Type: TC
Location: 25185 - 26039 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_15
Type: TC
Location: 26039 - 26878 (+)
Type: TC
Location: 26039 - 26878 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_16
Type: TC
Location: 26947 - 28146 (+)
Type: TC
Location: 26947 - 28146 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_17
Type: CAZyme
Location: 28602 - 30869 (-)
Type: CAZyme
Location: 28602 - 30869 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9232_18
Type: CAZyme
Location: 30999 - 32504 (-)
Type: CAZyme
Location: 30999 - 32504 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.