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Cluster: ShaoY_2019_ERR3404650_bin.5_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_10 13646 15328 + 2.A.66.4.4
pfam ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_11 15335 17275 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_12 17640 19253 + 3.A.1.5.27
TC ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_13 19411 20367 + 3.A.1.5.38
TC ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_14 20371 22386 + 3.A.1.5.25
TC ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_15 22387 23214 + 3.A.1.5.27
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_9168 ShaoY_2019_ERR3404650_bin.5_k119_9168_16 23346 24272 + CE7
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_10
Type: TC
Location: 13646 - 15328 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_11
Type: pfam
Location: 15335 - 17275 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_12
Type: TC
Location: 17640 - 19253 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_13
Type: TC
Location: 19411 - 20367 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_14
Type: TC
Location: 20371 - 22386 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_15
Type: TC
Location: 22387 - 23214 (+)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_9168_16
Type: CAZyme
Location: 23346 - 24272 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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