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Cluster: ShaoY_2019_ERR3404650_bin.5_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_18 21343 22581 - GH105
pfam ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_19 22689 23357 - Lipase_GDSL | Lipase_GDSL_2
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_20 23427 25592 - CE19 | CE8
peptidase ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_21 25589 26398 - S09.UPW
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_22 26503 28098 - GH28
TC ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_23 28216 28503 - 2.A.2.5.1
TC ShaoY_2019_ERR3404650_bin.5_k119_8531 ShaoY_2019_ERR3404650_bin.5_k119_8531_24 28649 29776 - 2.A.2.5.1
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_18
Type: CAZyme
Location: 21343 - 22581 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_19
Type: pfam
Location: 22689 - 23357 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_20
Type: CAZyme
Location: 23427 - 25592 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_21
Type: peptidase
Location: 25589 - 26398 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_22
Type: CAZyme
Location: 26503 - 28098 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_23
Type: TC
Location: 28216 - 28503 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_8531_24
Type: TC
Location: 28649 - 29776 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404650_bin.5_k119_8531_18 vegan > omnivore 1.01832 0.01882

🧭 Explore Read Mapping of CGC

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