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Cluster: ShaoY_2019_ERR3404650_bin.5_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_6 7774 8937 - GT2
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_7 9338 10333 - GT2
pfam ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_8 10326 11441 - EpsG
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_9 11636 12628 - GT2
CAZyme ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_10 12633 13466 - GT2
TC ShaoY_2019_ERR3404650_bin.5_k119_1310 ShaoY_2019_ERR3404650_bin.5_k119_1310_11 13467 14132 - 9.B.18.1.2
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_6
Type: CAZyme
Location: 7774 - 8937 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_7
Type: CAZyme
Location: 9338 - 10333 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_8
Type: pfam
Location: 10326 - 11441 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_9
Type: CAZyme
Location: 11636 - 12628 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_10
Type: CAZyme
Location: 12633 - 13466 (-)
Gene ID: ShaoY_2019_ERR3404650_bin.5_k119_1310_11
Type: TC
Location: 13467 - 14132 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3404650_bin.5_k119_1310_11 vegan > omnivore 1.28150 0.01882

🧭 Explore Read Mapping of CGC

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