Cluster: SW209_43_CGC6
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: SW209_43
- CGC Family ID: CGCFAM_01160
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_63692 | k141_63692_46 | 53900 | 55339 | - | 2.A.1.3.39 |
| pfam | k141_63692 | k141_63692_47 | 55860 | 56201 | + | ArsC |
| NULL(UNKNOWN) | k141_63692 | k141_63692_48 | 56675 | 56917 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_63692 | k141_63692_49 | 56939 | 58651 | - | GH154 |
| CAZyme | k141_63692 | k141_63692_50 | 58654 | 59877 | - | GH28 |
| CAZyme | k141_63692 | k141_63692_51 | 59895 | 60848 | - | GH43_24 |
| pfam | k141_63692 | k141_63692_52 | 60845 | 61660 | - | DUF7402 |
| CAZyme | k141_63692 | k141_63692_53 | 61671 | 63302 | - | CBM91 | GH43_11 |
| pfam | k141_63692 | k141_63692_54 | 63306 | 64148 | - | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | k141_63692 | k141_63692_55 | 64142 | 65293 | - | GH88 |
| NULL(UNKNOWN) | k141_63692 | k141_63692_56 | 65274 | 65918 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_63692 | k141_63692_57 | 65996 | 66877 | - | 4.A.6.1.19 |
| TC | k141_63692 | k141_63692_58 | 66870 | 67739 | - | 4.A.6.1.11 |
Gene ID: k141_63692_46
Type: TC
Location: 53900 - 55339 (-)
Type: TC
Location: 53900 - 55339 (-)
Gene ID: k141_63692_47
Type: pfam
Location: 55860 - 56201 (+)
Type: pfam
Location: 55860 - 56201 (+)
Gene ID: k141_63692_48
Type:
Location: 56675 - 56917 (+)
Type:
Location: 56675 - 56917 (+)
Gene ID: k141_63692_49
Type: CAZyme
Location: 56939 - 58651 (-)
Type: CAZyme
Location: 56939 - 58651 (-)
Gene ID: k141_63692_50
Type: CAZyme
Location: 58654 - 59877 (-)
Type: CAZyme
Location: 58654 - 59877 (-)
Gene ID: k141_63692_51
Type: CAZyme
Location: 59895 - 60848 (-)
Type: CAZyme
Location: 59895 - 60848 (-)
Gene ID: k141_63692_52
Type: pfam
Location: 60845 - 61660 (-)
Type: pfam
Location: 60845 - 61660 (-)
Gene ID: k141_63692_53
Type: CAZyme
Location: 61671 - 63302 (-)
Type: CAZyme
Location: 61671 - 63302 (-)
Gene ID: k141_63692_54
Type: pfam
Location: 63306 - 64148 (-)
Type: pfam
Location: 63306 - 64148 (-)
Gene ID: k141_63692_55
Type: CAZyme
Location: 64142 - 65293 (-)
Type: CAZyme
Location: 64142 - 65293 (-)
Gene ID: k141_63692_56
Type:
Location: 65274 - 65918 (-)
Type:
Location: 65274 - 65918 (-)
Gene ID: k141_63692_57
Type: TC
Location: 65996 - 66877 (-)
Type: TC
Location: 65996 - 66877 (-)
Gene ID: k141_63692_58
Type: TC
Location: 66870 - 67739 (-)
Type: TC
Location: 66870 - 67739 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.