Cluster: SW192_maxbin.014_sub_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: SW192_maxbin.014_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_5258 | k141_5258_64 | 69240 | 70682 | + | 3.A.1.8.1 |
| TC | k141_5258 | k141_5258_65 | 70686 | 71756 | + | 3.A.1.1.3 |
| pfam | k141_5258 | k141_5258_66 | 72207 | 73490 | + | HGD-D |
| TC | k141_5258 | k141_5258_67 | 73675 | 75285 | + | 3.A.1.5.11 |
| TC | k141_5258 | k141_5258_68 | 75372 | 76325 | + | 3.A.1.5.11 |
| TC | k141_5258 | k141_5258_69 | 76325 | 77152 | + | 3.A.1.5.39 |
| TC | k141_5258 | k141_5258_70 | 77156 | 78154 | + | 3.A.1.5.35 |
| TC | k141_5258 | k141_5258_71 | 78141 | 78926 | + | 3.A.1.5.36 |
| pfam | k141_5258 | k141_5258_72 | 79004 | 80167 | + | HGD-D |
| pfam | k141_5258 | k141_5258_73 | 80219 | 80983 | + | BcrAD_BadFG |
| CAZyme | k141_5258 | k141_5258_74 | 80998 | 82242 | + | GT4 |
Gene ID: k141_5258_64
Type: TC
Location: 69240 - 70682 (+)
Type: TC
Location: 69240 - 70682 (+)
Gene ID: k141_5258_65
Type: TC
Location: 70686 - 71756 (+)
Type: TC
Location: 70686 - 71756 (+)
Gene ID: k141_5258_66
Type: pfam
Location: 72207 - 73490 (+)
Type: pfam
Location: 72207 - 73490 (+)
Gene ID: k141_5258_67
Type: TC
Location: 73675 - 75285 (+)
Type: TC
Location: 73675 - 75285 (+)
Gene ID: k141_5258_68
Type: TC
Location: 75372 - 76325 (+)
Type: TC
Location: 75372 - 76325 (+)
Gene ID: k141_5258_69
Type: TC
Location: 76325 - 77152 (+)
Type: TC
Location: 76325 - 77152 (+)
Gene ID: k141_5258_70
Type: TC
Location: 77156 - 78154 (+)
Type: TC
Location: 77156 - 78154 (+)
Gene ID: k141_5258_71
Type: TC
Location: 78141 - 78926 (+)
Type: TC
Location: 78141 - 78926 (+)
Gene ID: k141_5258_72
Type: pfam
Location: 79004 - 80167 (+)
Type: pfam
Location: 79004 - 80167 (+)
Gene ID: k141_5258_73
Type: pfam
Location: 80219 - 80983 (+)
Type: pfam
Location: 80219 - 80983 (+)
Gene ID: k141_5258_74
Type: CAZyme
Location: 80998 - 82242 (+)
Type: CAZyme
Location: 80998 - 82242 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_5258_67 | vegan > omnivore | 3.14657 | 0.01287 |
| k141_5258_68 | vegan > omnivore | 2.47541 | 0.01287 |
| k141_5258_69 | vegan > omnivore | 2.70246 | 0.01287 |
| k141_5258_70 | vegan > omnivore | 1.15107 | 0.01287 |
| k141_5258_71 | vegan > omnivore | 2.50151 | 0.01287 |