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Cluster: SW189_18_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_116405 k141_116405_11 10656 11567 + 3.A.1.105.15
TC k141_116405 k141_116405_12 11560 12303 + 3.A.1.105.15
TC k141_116405 k141_116405_13 12317 13363 + 3.A.1.105.4
TC k141_116405 k141_116405_14 13370 14479 + 3.A.1.105.4
CAZyme k141_116405 k141_116405_15 14904 17390 + GH2
NULL(UNKNOWN) k141_116405 k141_116405_16 17432 17530 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_116405 k141_116405_17 17746 20529 - GH2
CAZyme k141_116405 k141_116405_18 20844 22949 + GH2
pfam k141_116405 k141_116405_19 23520 24437 + DHDPS
TC k141_116405 k141_116405_20 24469 27168 + 2.A.21.3.7
Gene ID: k141_116405_11
Type: TC
Location: 10656 - 11567 (+)
Gene ID: k141_116405_12
Type: TC
Location: 11560 - 12303 (+)
Gene ID: k141_116405_13
Type: TC
Location: 12317 - 13363 (+)
Gene ID: k141_116405_14
Type: TC
Location: 13370 - 14479 (+)
Gene ID: k141_116405_15
Type: CAZyme
Location: 14904 - 17390 (+)
Gene ID: k141_116405_16
Type:
Location: 17432 - 17530 (-)
Gene ID: k141_116405_17
Type: CAZyme
Location: 17746 - 20529 (-)
Gene ID: k141_116405_18
Type: CAZyme
Location: 20844 - 22949 (+)
Gene ID: k141_116405_19
Type: pfam
Location: 23520 - 24437 (+)
Gene ID: k141_116405_20
Type: TC
Location: 24469 - 27168 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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