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Cluster: SW178_7_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_78587 k141_78587_25 27315 29816 - GH2
pfam k141_78587 k141_78587_26 30012 30590 - DUF305
TC k141_78587 k141_78587_27 30813 31925 + 3.A.1.1.26
pfam k141_78587 k141_78587_28 32097 33014 + HTH_30 | GGDEF_2
NULL(UNKNOWN) k141_78587 k141_78587_29 33007 33507 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_78587 k141_78587_30 33566 35311 - 3.A.1.135.6
TC k141_78587 k141_78587_31 35304 37085 - 3.A.1.21.1
TF k141_78587 k141_78587_32 37171 38130 - HTH_AraC
TC k141_78587 k141_78587_33 38136 39539 - 3.A.1.31.2
pfam k141_78587 k141_78587_34 39552 40235 - CbiQ
TC k141_78587 k141_78587_35 40235 40840 - 3.A.1.31.2
Gene ID: k141_78587_25
Type: CAZyme
Location: 27315 - 29816 (-)
Gene ID: k141_78587_26
Type: pfam
Location: 30012 - 30590 (-)
Gene ID: k141_78587_27
Type: TC
Location: 30813 - 31925 (+)
Gene ID: k141_78587_28
Type: pfam
Location: 32097 - 33014 (+)
Gene ID: k141_78587_29
Type:
Location: 33007 - 33507 (+)
Gene ID: k141_78587_30
Type: TC
Location: 33566 - 35311 (-)
Gene ID: k141_78587_31
Type: TC
Location: 35304 - 37085 (-)
Gene ID: k141_78587_32
Type: TF
Location: 37171 - 38130 (-)
Gene ID: k141_78587_33
Type: TC
Location: 38136 - 39539 (-)
Gene ID: k141_78587_34
Type: pfam
Location: 39552 - 40235 (-)
Gene ID: k141_78587_35
Type: TC
Location: 40235 - 40840 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_78587_31 vegetarian > vegan 1.19162 0.01882

🧭 Explore Read Mapping of CGC

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