Cluster: SW171_30_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: SW171_30
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_29989 | k141_29989_34 | 38415 | 38972 | - | 2.A.107.1.2 |
| STP | k141_29989 | k141_29989_35 | 39221 | 39781 | - | Nitroreductase |
| peptidase | k141_29989 | k141_29989_36 | 39778 | 41118 | - | M18.UPW |
| TC | k141_29989 | k141_29989_37 | 41131 | 42177 | - | 9.A.23.1.1 |
| CAZyme | k141_29989 | k141_29989_38 | 42229 | 43662 | - | CE12 |
Gene ID: k141_29989_34
Type: TC
Location: 38415 - 38972 (-)
Type: TC
Location: 38415 - 38972 (-)
Gene ID: k141_29989_35
Type: STP
Location: 39221 - 39781 (-)
Type: STP
Location: 39221 - 39781 (-)
Gene ID: k141_29989_36
Type: peptidase
Location: 39778 - 41118 (-)
Type: peptidase
Location: 39778 - 41118 (-)
Gene ID: k141_29989_37
Type: TC
Location: 41131 - 42177 (-)
Type: TC
Location: 41131 - 42177 (-)
Gene ID: k141_29989_38
Type: CAZyme
Location: 42229 - 43662 (-)
Type: CAZyme
Location: 42229 - 43662 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_29989_34 | vegetarian > omnivore | 1.27740 | 0.01456 |
| k141_29989_35 | vegan > omnivore | 1.74019 | 0.00770 |
| k141_29989_37 | vegan > omnivore | 1.49533 | 0.00770 |
| k141_29989_37 | vegetarian > omnivore | 1.14022 | 0.01456 |
| k141_29989_38 | vegan > omnivore | 2.19918 | 0.00770 |
| k141_29989_38 | vegetarian > omnivore | 1.65166 | 0.01456 |