Cluster: SW171_30_CGC24
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: SW171_30
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_114229 | k141_114229_418 | 425347 | 426540 | - | 8.A.59.4.1 |
| TC | k141_114229 | k141_114229_419 | 426755 | 428866 | + | 1.B.52.2.1 |
| pfam | k141_114229 | k141_114229_420 | 429121 | 429900 | + | adh_short | KR | adh_short_C2 | SDR |
| CAZyme | k141_114229 | k141_114229_421 | 430027 | 434199 | - | PL9_1 |
| CAZyme | k141_114229 | k141_114229_422 | 434554 | 437352 | - | CE8 |
| TF | k141_114229 | k141_114229_423 | 437631 | 438452 | + | HTH_AraC | HTH_AraC |
| TC | k141_114229 | k141_114229_424 | 438807 | 441467 | + | 3.A.3.2.21 |
| TC | k141_114229 | k141_114229_425 | 441545 | 442306 | - | 3.A.1.3.28 |
| TC | k141_114229 | k141_114229_426 | 442364 | 443893 | - | 3.A.1.3.12 |
Gene ID: k141_114229_418
Type: TC
Location: 425347 - 426540 (-)
Type: TC
Location: 425347 - 426540 (-)
Gene ID: k141_114229_419
Type: TC
Location: 426755 - 428866 (+)
Type: TC
Location: 426755 - 428866 (+)
Gene ID: k141_114229_420
Type: pfam
Location: 429121 - 429900 (+)
Type: pfam
Location: 429121 - 429900 (+)
Gene ID: k141_114229_421
Type: CAZyme
Location: 430027 - 434199 (-)
Type: CAZyme
Location: 430027 - 434199 (-)
Gene ID: k141_114229_422
Type: CAZyme
Location: 434554 - 437352 (-)
Type: CAZyme
Location: 434554 - 437352 (-)
Gene ID: k141_114229_423
Type: TF
Location: 437631 - 438452 (+)
Type: TF
Location: 437631 - 438452 (+)
Gene ID: k141_114229_424
Type: TC
Location: 438807 - 441467 (+)
Type: TC
Location: 438807 - 441467 (+)
Gene ID: k141_114229_425
Type: TC
Location: 441545 - 442306 (-)
Type: TC
Location: 441545 - 442306 (-)
Gene ID: k141_114229_426
Type: TC
Location: 442364 - 443893 (-)
Type: TC
Location: 442364 - 443893 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_114229_418 | vegan > omnivore | 1.47470 | 0.00770 |
| k141_114229_419 | vegan > omnivore | 1.54569 | 0.00770 |
| k141_114229_422 | vegan > omnivore | 2.21516 | 0.00770 |
| k141_114229_422 | vegetarian > omnivore | 1.22025 | 0.01456 |
| k141_114229_423 | vegan > omnivore | 1.42277 | 0.00770 |
| k141_114229_423 | vegetarian > omnivore | 1.28947 | 0.01456 |
| k141_114229_424 | vegan > omnivore | 1.38785 | 0.00770 |