Cluster: SW171_30_CGC21
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: SW171_30
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_114229 | k141_114229_76 | 90686 | 92476 | - | 3.A.1.106.2 |
| CAZyme | k141_114229 | k141_114229_77 | 92489 | 94042 | - | GH28 |
| NULL(UNKNOWN) | k141_114229 | k141_114229_78 | 94033 | 94953 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_114229 | k141_114229_79 | 94966 | 96918 | - | CBM91 | GH43_12 |
| TC | k141_114229 | k141_114229_80 | 97080 | 97943 | - | 3.A.1.1.29 |
| TC | k141_114229 | k141_114229_81 | 97957 | 99423 | - | 3.A.1.1.29 |
| NULL(UNKNOWN) | k141_114229 | k141_114229_82 | 99597 | 101186 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_114229 | k141_114229_83 | 101573 | 102223 | - | UPF0029 | DUF1949 |
| CAZyme | k141_114229 | k141_114229_84 | 102396 | 105074 | + | GT51 |
| pfam | k141_114229 | k141_114229_85 | 105108 | 105467 | - | SpoVAC_SpoVAEB |
| TC | k141_114229 | k141_114229_86 | 105517 | 106578 | - | 9.A.11.1.1 |
| TC | k141_114229 | k141_114229_87 | 106533 | 106991 | - | 9.A.11.1.1 |
Gene ID: k141_114229_76
Type: TC
Location: 90686 - 92476 (-)
Type: TC
Location: 90686 - 92476 (-)
Gene ID: k141_114229_77
Type: CAZyme
Location: 92489 - 94042 (-)
Type: CAZyme
Location: 92489 - 94042 (-)
Gene ID: k141_114229_78
Type:
Location: 94033 - 94953 (-)
Type:
Location: 94033 - 94953 (-)
Gene ID: k141_114229_79
Type: CAZyme
Location: 94966 - 96918 (-)
Type: CAZyme
Location: 94966 - 96918 (-)
Gene ID: k141_114229_80
Type: TC
Location: 97080 - 97943 (-)
Type: TC
Location: 97080 - 97943 (-)
Gene ID: k141_114229_81
Type: TC
Location: 97957 - 99423 (-)
Type: TC
Location: 97957 - 99423 (-)
Gene ID: k141_114229_82
Type:
Location: 99597 - 101186 (-)
Type:
Location: 99597 - 101186 (-)
Gene ID: k141_114229_83
Type: pfam
Location: 101573 - 102223 (-)
Type: pfam
Location: 101573 - 102223 (-)
Gene ID: k141_114229_84
Type: CAZyme
Location: 102396 - 105074 (+)
Type: CAZyme
Location: 102396 - 105074 (+)
Gene ID: k141_114229_85
Type: pfam
Location: 105108 - 105467 (-)
Type: pfam
Location: 105108 - 105467 (-)
Gene ID: k141_114229_86
Type: TC
Location: 105517 - 106578 (-)
Type: TC
Location: 105517 - 106578 (-)
Gene ID: k141_114229_87
Type: TC
Location: 106533 - 106991 (-)
Type: TC
Location: 106533 - 106991 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_114229_83 | vegan > omnivore | 2.56673 | 0.00770 |
| k141_114229_83 | vegetarian > omnivore | 1.08386 | 0.01456 |
| k141_114229_84 | vegan > omnivore | 2.28324 | 0.00770 |
| k141_114229_85 | vegan > omnivore | 2.40108 | 0.00770 |
| k141_114229_86 | vegan > omnivore | 1.29426 | 0.00770 |
| k141_114229_87 | vegan > omnivore | 2.66627 | 0.00770 |