Cluster: SW171_30_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: SW171_30
- CGC Family ID: CGCFAM_01043
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_112543 | k141_112543_33 | 34215 | 35792 | - | GH5_2 |
| pfam | k141_112543 | k141_112543_34 | 36038 | 37321 | + | MatE | MatE |
| pfam | k141_112543 | k141_112543_35 | 37343 | 38329 | - | DNA_pol3_delta | DNA_pol3_delta_C |
| TC | k141_112543 | k141_112543_36 | 38399 | 40711 | - | 3.A.11.1.1 |
Gene ID: k141_112543_33
Type: CAZyme
Location: 34215 - 35792 (-)
Type: CAZyme
Location: 34215 - 35792 (-)
Gene ID: k141_112543_34
Type: pfam
Location: 36038 - 37321 (+)
Type: pfam
Location: 36038 - 37321 (+)
Gene ID: k141_112543_35
Type: pfam
Location: 37343 - 38329 (-)
Type: pfam
Location: 37343 - 38329 (-)
Gene ID: k141_112543_36
Type: TC
Location: 38399 - 40711 (-)
Type: TC
Location: 38399 - 40711 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_112543_34 | vegan > omnivore | 1.08179 | 0.00770 |
| k141_112543_35 | vegan > omnivore | 1.62801 | 0.00770 |
| k141_112543_36 | vegan > omnivore | 2.26041 | 0.00770 |
| k141_112543_36 | vegetarian > omnivore | 1.71353 | 0.01456 |