Cluster: SW162_30_sub_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: SW162_30_sub
- CGC Family ID: CGCFAM_06670
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_97715 | k141_97715_1 | 300 | 665 | + | 9.B.55.2.2 |
| NULL(UNKNOWN) | k141_97715 | k141_97715_2 | 916 | 1806 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | k141_97715 | k141_97715_3 | 2322 | 3686 | + | M38.UNW |
| TC | k141_97715 | k141_97715_4 | 3837 | 5234 | + | 2.A.40.2.1 |
| NULL(UNKNOWN) | k141_97715 | k141_97715_5 | 5654 | 6028 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_97715 | k141_97715_6 | 6195 | 6695 | + | rve |
| CAZyme | k141_97715 | k141_97715_7 | 7691 | 8680 | - | GT2 |
| TC | k141_97715 | k141_97715_8 | 8708 | 10159 | - | 2.A.66.2.16 |
| CAZyme | k141_97715 | k141_97715_9 | 10163 | 10993 | - | GT14 |
| pfam | k141_97715 | k141_97715_10 | 11053 | 12207 | - | PS_pyruv_trans |
| pfam | k141_97715 | k141_97715_11 | 12204 | 13475 | - | Wzy_C |
| CAZyme | k141_97715 | k141_97715_12 | 13527 | 14510 | - | GT2 |
| CAZyme | k141_97715 | k141_97715_13 | 14507 | 15334 | - | GT4 |
Gene ID: k141_97715_1
Type: TC
Location: 300 - 665 (+)
Type: TC
Location: 300 - 665 (+)
Gene ID: k141_97715_2
Type:
Location: 916 - 1806 (-)
Type:
Location: 916 - 1806 (-)
Gene ID: k141_97715_3
Type: peptidase
Location: 2322 - 3686 (+)
Type: peptidase
Location: 2322 - 3686 (+)
Gene ID: k141_97715_4
Type: TC
Location: 3837 - 5234 (+)
Type: TC
Location: 3837 - 5234 (+)
Gene ID: k141_97715_5
Type:
Location: 5654 - 6028 (+)
Type:
Location: 5654 - 6028 (+)
Gene ID: k141_97715_6
Type: pfam
Location: 6195 - 6695 (+)
Type: pfam
Location: 6195 - 6695 (+)
Gene ID: k141_97715_7
Type: CAZyme
Location: 7691 - 8680 (-)
Type: CAZyme
Location: 7691 - 8680 (-)
Gene ID: k141_97715_8
Type: TC
Location: 8708 - 10159 (-)
Type: TC
Location: 8708 - 10159 (-)
Gene ID: k141_97715_9
Type: CAZyme
Location: 10163 - 10993 (-)
Type: CAZyme
Location: 10163 - 10993 (-)
Gene ID: k141_97715_10
Type: pfam
Location: 11053 - 12207 (-)
Type: pfam
Location: 11053 - 12207 (-)
Gene ID: k141_97715_11
Type: pfam
Location: 12204 - 13475 (-)
Type: pfam
Location: 12204 - 13475 (-)
Gene ID: k141_97715_12
Type: CAZyme
Location: 13527 - 14510 (-)
Type: CAZyme
Location: 13527 - 14510 (-)
Gene ID: k141_97715_13
Type: CAZyme
Location: 14507 - 15334 (-)
Type: CAZyme
Location: 14507 - 15334 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_97715_2 | vegan > omnivore | 1.89387 | 0.01332 |
| k141_97715_2 | vegetarian > omnivore | 2.06323 | 0.02195 |
| k141_97715_5 | vegetarian > omnivore | 1.87821 | 0.02195 |
| k141_97715_6 | vegan > omnivore | 1.95180 | 0.01332 |