Cluster: SW162_30_sub_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: SW162_30_sub
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_23618 | k141_23618_26 | 26413 | 27642 | + | 2.A.1.2.25 |
| CAZyme | k141_23618 | k141_23618_27 | 27886 | 29211 | + | GH4 |
| TC | k141_23618 | k141_23618_28 | 29236 | 30816 | + | 4.A.1.1.14 |
| TF | k141_23618 | k141_23618_29 | 30895 | 31695 | + | HTH_6 |
| TC | k141_23618 | k141_23618_30 | 31888 | 33450 | - | 4.A.1.1.3 |
| CAZyme | k141_23618 | k141_23618_31 | 33533 | 34858 | - | GH4 |
Gene ID: k141_23618_26
Type: TC
Location: 26413 - 27642 (+)
Type: TC
Location: 26413 - 27642 (+)
Gene ID: k141_23618_27
Type: CAZyme
Location: 27886 - 29211 (+)
Type: CAZyme
Location: 27886 - 29211 (+)
Gene ID: k141_23618_28
Type: TC
Location: 29236 - 30816 (+)
Type: TC
Location: 29236 - 30816 (+)
Gene ID: k141_23618_29
Type: TF
Location: 30895 - 31695 (+)
Type: TF
Location: 30895 - 31695 (+)
Gene ID: k141_23618_30
Type: TC
Location: 31888 - 33450 (-)
Type: TC
Location: 31888 - 33450 (-)
Gene ID: k141_23618_31
Type: CAZyme
Location: 33533 - 34858 (-)
Type: CAZyme
Location: 33533 - 34858 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.